Template:2012 Malaysia Cup group tables
- Group A
| Pos | Team | Pld | W | D | L | GF | GA | GD | Pts | Qualification |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 |  LionsXII
|
6 | 2 | 3 | 1 | 4 | 2 | +2 | 9 | Advanced to knockout stage |
| 2 | Johor FC | 6 | 2 | 3 | 1 | 6 | 6 | 0 | 9 | |
| 3 | Johor FA | 6 | 2 | 2 | 2 | 7 | 5 | +2 | 8 | |
| 4 | PKNS | 6 | 1 | 2 | 3 | 5 | 9 | −4 | 5 |
Source: FAM
- Group B
| Pos | Team | Pld | W | D | L | GF | GA | GD | Pts | Qualification |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | Kelantan | 6 | 3 | 2 | 1 | 13 | 8 | +5 | 11 | Advanced to knockout stage |
| 2 | ATM | 6 | 3 | 2 | 1 | 12 | 8 | +4 | 11 | |
| 3 | Kedah | 6 | 1 | 3 | 2 | 6 | 8 | −2 | 6 | |
| 4 | Terengganu | 6 | 1 | 1 | 4 | 6 | 13 | −7 | 4 |
Source: FAM
- Group C
| Pos | Team | Pld | W | D | L | GF | GA | GD | Pts | Qualification |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | Negeri Sembilan | 6 | 2 | 4 | 0 | 8 | 3 | +5 | 10 | Advanced to knockout stage |
| 2 | FELDA United | 6 | 1 | 4 | 1 | 13 | 12 | +1 | 7 | |
| 3 | Perak | 6 | 1 | 3 | 2 | 7 | 9 | −2 | 6 | |
| 4 | Sime Darby | 6 | 1 | 3 | 2 | 9 | 13 | −4 | 6 |
Source: FAM
- Group D
| Pos | Team | Pld | W | D | L | GF | GA | GD | Pts | Qualification |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | Selangor | 6 | 4 | 1 | 1 | 12 | 6 | +6 | 13 | Advanced to knockout stage |
| 2 | Pahang | 6 | 3 | 1 | 2 | 17 | 13 | +4 | 10 | |
| 3 | Sarawak | 6 | 2 | 1 | 3 | 10 | 13 | −3 | 7 | |
| 4 | T–Team | 6 | 1 | 1 | 4 | 7 | 14 | −7 | 4 |
Source: FAM