User:Jts1882/clade/test

CladeN template tests

Styling labels

Osteichthyes	Sarcopterygii Coelacanthiformes (1) — coelacanths Ceratodontiformes (3) — lungfishes Tetrapodomorpha — tetrapods (lobe‑finned fishes) Actinopterygii Cladistia Polypteriformes (1) — bichirs Chondrostei Acipenseriformes (2) — paddlefishes and sturgeons Neopterygii (ray‑finned fishes)

Branch length

	x 56 x 65 x D. willana 35 x x D. potatorum 65 x D. amatheiae 44 x 110 x D. fenestrata 46 x 80 x D. incurvata 30 x 60 x D. poha 20 x 35 x D. chathamensis x D. antarctica (NZ north) 25 35 x D. antarctica (NZ south) x x D. antarctica (Subantarctic and Chilean)

Note: total length = 200px

	10 50+25 Text x 25 50 Text x 50 Text x Text

	2.5em 12.5em+6.25em Text x 6.25em plus some overflow text 12.5em Text This is a long label with overflow 12.5em Text x Text

Canine phylogeny with ages of divergence (from wolf article)

Gray wolf Coyote 1.10 mya African golden wolf 1.32 mya Ethiopian wolf 1.62 mya Golden jackal 1.92 mya Dhole 2.74 mya African wild dog 3.06 mya Side-striped jackal Black-backed jackal 2.62 mya 3.50 mya

Modification with time calibrated branch lengths (test).

3.5mya 3.0mya 2.5mya 2.0mya 1.5mya 1.0mya 0.5mya Present   25 44 32 82 30 30 22 110 Gray wolf x Coyote x 110 African golden wolf 1.32 mya x 132 Ethiopian wolf 1.62 mya x 162 Golden jackal 1.92 mya x 192 Dhole 2.74 mya x 274 African wild dog 3.06 mya x 44 262 Side-striped jackal 2.62 mya x Black-backed jackal

Wolf update

	3.5 mya 3.0 mya 2.5 mya 2.0 mya 1.5 mya 1.0 mya 0.5 mya Present

50	50 38 262 Side-striped jackal x Black-backed jackal 2.62 mya x 50 250 African wild dog x 50 200 Dhole 104 96 Ethiopian wolf x 36 60 Golden jackal x 22 38 African golden wolf x Coyote Himalayan wolf /Tibetan wolf Indian plains wolf †Late Pleistocene   wolf Modern gray wolf Dog 30 kya 80 kya 120 kya 240 kya 380 kya 600 kya 960 kya 2.0 mya 2.5 mya 3.0 mya
3.5 mya

	3.5 mya 3.0 mya 2.5 mya 2.0 mya 1.5 mya 1.0 mya 0.5 mya Present

Evolution of wolf

test

†Canis lepophagus— Canis latrans    (Coyote) †Canis priscolatrans— extinct taxa †Canis ambrusteri— †Canis dirus    (Dire wolf) †Canis nehringi †Canis gezi †Canis etruscus— †Canis variabilis †Canis mosbachensis— Canis rufus  (red wolf) Canis lupus  (gray wolf) Canis familiaris        (dog)

Proposed evolution and branching of genus Canis towards the wolf.

†Canis lepophagus Canis latrans (Coyote) †Canis priscolatrans extinct taxa †Canis ambrusteri †Canis dirus (Dire wolf) †Canis nehringi †Canis gezi †Canis etruscus †Canis variabilis †Canis mosbachensis Canis rufus (red wolf) Canis lupus (gray wolf) Canis familiaris (dog)

Clade template tests

Using notes for abbreviations

Method 1:

Osteichthyes	Sarcopterygii Coelacanthiformes (1) — coelacanths Ceratodontiformes (3) — lungfishes Tetrapodomorpha — tetrapods (lobe‑finned fishes) Actinopterygii Cladistia Polypteriformes (1) — bichirs Chondrostei Acipenseriformes (2) — paddlefishes and sturgeons Neopterygii (ray‑finned fishes)

Method 2:

Osteichthyes	Sarcopterygii Coelacanthiformes (1) — coelacanths Ceratodontiformes (3) — lungfishes Tetrapodomorpha — tetrapods (lobe‑finned fishes) Actinopterygii Cladistia Polypteriformes (1) — bichirs Chondrostei Acipenseriformes (2) — paddlefishes and sturgeons Neopterygii Here is a test with clade label template (ray‑finned fishes)

Key:

Search for taxon in cladogram

Basic search:

insource:/|[ label]*[1-9] *=[ \[\']*Panthera/  hastemplate:Clade

Result: search for Panthera

Label length test

Cladogram with all branch widths adding up to 180px
x 50 x 60 x D. willana 40 x x D. potatorum 60 x D. amatheiae 30 x 110 x D. fenestrata 40 x 90 x D. incurvata 20 x 70 x D. poha 20 x 30 x D. chathamensis x D. antarctica (NZ north) 40 30 x D. antarctica (NZ south) x x D. antarctica (Subantarctic and Chilean)

180 x D. calibration

Example with adjustments necessary to even lines
x 50 x 60+10 x D. willana 40 x x D. potatorum 60+10 x D. amatheiae 30 x 110+15 x D. fenestrata 40 x 90+10 x D. incurvata 20 x 70+5 x D. poha 20 x 30 x D. chathamensis x D. antarctica (NZ north) 40 30 x D. antarctica (NZ south) x x D. antarctica (Subantarctic and Chilean)

Example setting padding to zero
x 50 x 60 x D. willana 40 x x D. potatorum 60 x D. amatheiae 30 x 110 x D. fenestrata 40 x 90 x D. incurvata 20 x 70 x D. poha 20 x 30 x D. chathamensis x D. antarctica (NZ north) 40 30 x D. antarctica (NZ south) x x D. antarctica (Subantarctic and Chilean)

New clade list test

Use wikitext-like list with @ instead of *

label	A A1 A2 B C C1 C2 C2a C2b C2b1 #color1=red C2b2 C3 D D1 D2

Use listConverter function to generate clade code:

          {{clade
          |label1=A
          |1={{clade
             |1=A1
             |2=A2
             }}
          |2=B
          |label3=C
          |3={{clade
             |1=C1
             |label2=C2
             |2={{clade
                |1=C2a
                |label2=C2b
                |2={{clade
                   |1=C2b1
                   |2=C2b2
                   }}
                }}
             |3=C3
             }}
          |label4=D
          |4={{clade
             |1=D1
             |2=D2
             }}
          }}

Test result:

A	A1 A2
	B
C	C1 C2 C2a C2b C2b1 C2b2 C3
D	D1 D2

Interactive clade test

Click to alter

A B

C D

Clade transclusion test

This example retrieves the Serpentes clade from the Zheng & Weins (2016) squamata phylogenetic tree in template {{Phylogeny/Squamata}}, and replaces Caenophidia with the clade from the Figueroa et al. (2016) snake study in template {{Phylogeny/Snakes}}).

Serpentes

Scolecophidia Leptotyphlopidae Gerrhopilidae Xenotyphlopidae Typhlopidae Anomalepididae Alethinophidia Amerophidia Aniliidae Tropidophiidae Afrophidia Booidea Uropeltidae Anomochilidae Cylindrophiidae Xenopeltidae Loxocemidae Pythonidae Calabariidae Boidae Xenophidiidae Bolyeriidae Caenophidia Acrochordidae Xenodermidae Pareidae Viperidae Viperinae Azemiopinae Crotalinae Homalopsidae Lamprophiidae Psammophiinae Prosymninae Pseudaspidinae Atractaspidinae Aparallactinae Cyclorinae Lamphrophiinae Pseudoxyrhophiinae Elapidae Colubridae Sibynophiinae Natricinae Pseudoxenodontinae Dipsadinae Grayinae Calamariinae Ahaetuliinae Colubrinae Caenophidia from Figueroa et al. (2016)

Spacing test

The extra space before a cladogram due to parser error T18700 has resurfaced as a result of recent changes. It is fixed in {{CladeN}} at the expense of post expand include size. [Now also fixed in {{Clade}}]

This is a simple cladogram with no nested elements using {{Clade}}

x	A

This is a simple cladogram with no nested elements using {{CladeN}}

x	A

This is a simple cladogram with a nested element using {{Clade}}

x	A
	y B C

This is a simple cladogram with a nested elementa using {{CladeN}}

x	A
	y B C

End test.

Transclusion test

Moved to User:Jts1882/test/transclude sections

Clade hover & highlight

Canis	Canis lupus Canis familiaris Canis latrans Canis rufus

Canis	Canis lupus Canis familiaris Canis latrans Canis rufus

Phylogeny of Nine-Primaried Oscines

Cladogram based on Barker et al (2015). Passerellidae clade labels from Klicka et al (2014) and Bryson (2016). Tribe names from Boyd's TiF. Note the Ammodramus division into Ammodramus s.s., Ammospiza, and Passerculus species is recognised by HBW Alive/Birdlife and Boyd's TiF.

Bryson et al (2016) have different topology of major clades (tribes).

Barker-2015

Passerellidae clade H Chlorospingini clade G Ammodramini clade F Spizellini clade E Arremonini clade D Passerellini clade A Passerculini Pipilonini clade B clade C

Bryson-2016

Passerellidae clade F Spizellini clade H Chlorospingini clade G Ammodramini clade E Arremonini clade D Passerellini Pipilonini clade B clade C clade A Passerculini

Barker-2015 (genus level for Passerellidae)

Emberizoidea

Emberizidae Passerellidae ⊞ Chlorospingini Oreothraupis Chlorospingus clade H Ammodramini Ammodramus (part) (=Ammodramus s.s: aurifrons, humeralis, savannarum) Rhynchospiza Arremonops Peucaea (clade G) Spizellini Amphispiza Chondestes Calamospiza Spizella (clade F) Arremonini Arremon Lysurus Arremon Buarremon   (alternative) (clade E) Passerellini Passerella Spizelloides (as Spizella arborea) Junco Zonotrichia (clade D) Passerculini Pooecetes Artemisiospiza Oriturus Ammodramus (part) (=Ammospiza: leconteii, maritimus, caudacutus, nelsoni [eBird/Clements]) Ammodramus henslowii (=Passerculus henslowii [HBW?] ; =Centronyx henslowii [eBird/Clements]) Passerculus Xenospiza (=Melospiza?) Ammodramus bairdii (=Passerculus bairdii [HBW?]; =Centronyx bairdii [eBird/Clements]) Melospiza Pooecetes Artemisiospiza   Oriturus Ammospiza Centronyx Passerculus Xenospiza Melospiza (clade A) Pipilonini clade B Aimophila Melozone (?Melozone+Kieneria) Pezopetes Torreornis clade C Pipilo Atlapetes s.l. Atlapetes (pileatus, glutturalis, albinucha) Pselliophorus (=Atlapetes) Atlapetes (incl. Pselliophorus) ⊟ Nesospingidae Spindalidae Calyptophilidae Phaenicophilidae Parulidae Zeledoniidae Icteriidae Teretistridae Icteridae Rhodinocichlidae Calcariidae Mitrospingidae Cardinalidae Thraupidae