GenomeView is a next-generation stand-alone genome browser and editor specifically designed to visualize and manipulate a multitude of genomics data. [11]
HuRef - stand-alone browser for navigating individual human genome
Genostar GenoBrowser: a standalone application to display and explore genomic data from any kind of file (EMBL, GenBank, Fasta, GFF...)
Genoverse interactive genome browser: web-based, scrollable genome browser, designed to be easily integrated into any website with a few strings of javascript. Loads data dynamically via AJAX and visualizes via HTML5 canvas element
GenPlay A genome viewer and analyzer developed in Java at Albert Einstein College of Medicine.[14]
Golden Helix GenomeBrowse A free genome browser for exploring sequencing pile-up and coverage data with numerous annotation tracks hosted on the cloud.
Integrated Genome Browser (IGB) Open source and free Java-based desktop genome viewer for visualizing next-gen sequence and microarray data.
Integrative Genomics Viewer (IGV) A high-performance visualization tool for interactive exploration of large, integrated genomic datasets [15]
NextBio Genome Browser - an interactive application that lets visualization of physical relationship between private or public biosets and different types of genomic elements, including genes, miRNA targets, CNVs, CpG islands, SNPs, GWAS associations, and LD blocks]
SEED viewer for visualizing and interrogating the SEED database of complete microbial genomes
TGAC Browser visualisation solutions for big data in the genomic era. An open-source Genome Browser developed at The Genome Analysis Centre, UK works with Ensembl Data set and many more.
Viral Genome Organizer (VGO) A genome browser providing visualization and analysis tools for annotated whole genomes from the eleven virus families in the VBRC (Viral Bioinformatics Resource Center) databases
VISTA genome browser a comprehensive suite of programs and databases for comparative analysis of genomic sequences. There are two ways of using VISTA - you can submit your own sequences and alignments for analysis (VISTA servers) or examine pre-computed whole-genome alignments of different species.
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^Wang, H.; Su, Y.; MacKey, A. J.; Kraemer, E. T.; Kissinger, J. C. (2006). "SynView: A GBrowse-compatible approach to visualizing comparative genome data". Bioinformatics. 22 (18): 2308–2309. doi:10.1093/bioinformatics/btl389. PMID16844709.
^Zhou, X.; Wang, T. (2012). "Using the Wash U Epigenome Browser to Examine Genome-Wide Sequencing Data". In Andreas D. Baxevanis (ed.). Current Protocols in Bioinformatics. pp. Unit10.Unit10. doi:10.1002/0471250953.bi1010s40. ISBN0471250953. PMID23255151.