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Thermoanaerobacter

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Thermoanaerobacter
Scientific classification Edit this classification
Domain: Bacteria
Phylum: Bacillota
Class: Clostridia
Order: Thermoanaerobacterales
Family: Thermoanaerobacteraceae
Genus: Thermoanaerobacter
Wiegel & Ljungdahl 1982
Type species
Thermoanaerobacter ethanolicus
Wiegel & Ljungdahl 1982
Species

See text

Synonyms
  • Acetogenium Leigh & Wolfe 1983
  • Thermoanaerobium Zeikus, Hegge & Anderson 1983
  • Thermobacteroides Ben-Bassat & Zeikus 1983

Thermoanaerobacter is a genus in the phylum Bacillota (Bacteria).[1] Members of this genus are thermophilic and anaerobic, several of them were previously described as Clostridium species and members of the now obsolete genera Acetogenium and Thermobacteroides[2][3]

Etymology

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The name Thermoanaerobacter derives from:
Greek adjective thermos (θερμός), hot; Greek prefix an (ἄν), not; Greek noun aer, aeros (ἀήρ, ἀέρος), air; Neo-Latin masculine gender noun, bacter, nominally meaning "a rod", but in effect meaning a bacterium, rod; Neo-Latin masculine gender noun Thermoanaerobacter, rod which grows in the absence of air at elevated temperatures.[4]

Species

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The genus contains 15 species, namely[4]

Three former members of this genus, T. subterraneus, T. tengcongensis and T. yonseiensis, were reclassified as subspecies of Caldanaerobacter subterraneus[19]

Phylogeny

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The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN)[20] and National Center for Biotechnology Information (NCBI)[21]

16S rRNA based LTP_08_2023[22][23][24] 120 marker proteins based GTDB 08-RS214[25][26][27]

T. thermocopriae

T. mathranii alimentarius Carlier, Bonne & Bedora-Faure 2007

T. mathranii mathranii Larsen, Nielsen & Ahring 1998

T. italicus

T. pentosaceus

T. sulfurigignens

T. uzonensis

T. kivui

T. brockii lactiethylicus Cayol et al. 1995

T. pseudethanolicus

T. brockii

T. b. brockii (Zeikus et al. 1983) Lee et al. 1993

T. b. finnii (Schmid et al. 1986) Cayol et al. 1995

T. siderophilus

T. wiegelii

T. sulfurophilus

T. acetoethylicus

T. ethanolicus

T. thermohydrosulfuricus

T. kivui

T. uzonensis

T. pseudethanolicus (incl. T. brockii)

T. thermocopriae (incl. T. italicus & T. mathranii)

T. wiegelii

T. ethanolicus (incl. T. siderophilus & T. thermohydrosulfuricus)

See also

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References

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  1. ^ Classification of Genus Thermoanaerobacter in LPSN; Parte, Aidan C.; Sardà Carbasse, Joaquim; Meier-Kolthoff, Jan P.; Reimer, Lorenz C.; Göker, Markus (1 November 2020). "List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ". International Journal of Systematic and Evolutionary Microbiology. 70 (11): 5607–5612. doi:10.1099/ijsem.0.004332.
  2. ^ Collins, MD; Lawson, PA; Willems, A; et al. (1994). "The Phylogeny of the Genus Clostridium: Proposal of Five New Genera and Eleven New Species Combinations". Int. J. Syst. Bacteriol. 44 (4): 812–26. doi:10.1099/00207713-44-4-812. PMID 7981107.
  3. ^ a b Rainey, F.A.; Stackebrandt, E. (1993). "Transfer of the type species of the genus Thermobacteroides to the genus Thermoanaerobacter as Thermoanaerobacter acetoethylicus (Ben-Bassat and Zeikus 1981) comb. nov., description of Coprothermobacter gen. nov., and reclassification of Thermobacteroides proteolyticus as Coprothermobacter proteolyticus (Ollivier et al. 1985) comb. nov". Int. J. Syst. Bacteriol. 43 (4): 857–859. doi:10.1099/00207713-43-4-857.
  4. ^ a b Thermoanaerobacter in LPSN; Parte, Aidan C.; Sardà Carbasse, Joaquim; Meier-Kolthoff, Jan P.; Reimer, Lorenz C.; Göker, Markus (1 November 2020). "List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ". International Journal of Systematic and Evolutionary Microbiology. 70 (11): 5607–5612. doi:10.1099/ijsem.0.004332.
  5. ^ Zeikus, J.G.; Hegge, P.W.; Anderson, M.A. (1979). "Thermoanaerobium brockii gen. nov. and sp. nov., a new chemoorganotrophic, caldoactive, anaerobic bacterium". Archives of Microbiology. 122 (1): 41–48. doi:10.1007/BF00408044.
  6. ^ a b Lee, Y.E.; Jain, M.K.; Lee, C.; Lowe, S.E.; Zeikus, J.G. (1993). "Taxonomic distinction of saccharolytic thermophilic anaerobes: description of Thermoanaerobacterium xylanolyticum gen. nov., sp. nov., and Thermoanaerobacterium saccharolyticum gen. nov., sp. nov.; reclassification of Thermoanaerobium brockii, Clostridium thermosulfurogenes, and Clostridium thermohydrosulfuricum E100-69 as Thermoanaerobacter brockii comb. nov., Thermoanaerobacterium thermosulfurigenes comb. nov., and Thermoanaerobacter thermohydrosulfuricus comb. nov., respectively; and transfer of Clostridium thermohydrosulfuricum 39E to Thermoanaerobacter ethanolicus". International Journal of Systematic and Evolutionary Microbiology. 43 (1): 41–51. doi:10.1099/00207713-43-1-41.
  7. ^ Wiegel, J. R.; Ljungdahl, L. G. (1981). "Thermoanaerobacter ethanolicus gen. Nov., spec. Nov., a new, extreme thermophilic, anaerobic bacterium". Archives of Microbiology. 128 (4): 343–348. doi:10.1007/BF00405910.
  8. ^ Kozianowski, G.; Canganella, F.; Rainey, F. A.; Hippe, H.; Antranikian, G. (1997). "Purification and characterization of thermostable pectate-lyases from a newly isolated thermophilic bacterium, Thermoanaerobacter italicus sp. Nov". Extremophiles. 1 (4): 171–182. doi:10.1007/s007920050031. PMID 9680298.
  9. ^ a b Collins, M. D.; Lawson, P. A.; Willems, A.; Cordoba, J. J.; Fernandez-Garayzabal, J.; Garcia, P.; Cai, J.; Hippe, H.; Farrow, J. A. E. (1994). "The Phylogeny of the Genus Clostridium: Proposal of Five New Genera and Eleven New Species Combinations". International Journal of Systematic Bacteriology. 44 (4): 812–826. doi:10.1099/00207713-44-4-812. ISSN 0020-7713. PMID 7981107.
  10. ^ Larsen, L.; Nielsen, P.; Ahring, B. K. (1997). "Thermoanaerobacter mathranii sp. nov., an ethanol-producing, extremely thermophilic anaerobic bacterium from a hot spring in Iceland". Archives of Microbiology. 168 (2): 114–119. doi:10.1007/s002030050476. PMID 9238102.
  11. ^ "List of new names and new combinations previously effectively, but not validly, published". International Journal of Systematic and Evolutionary Microbiology. 57 (Pt 1): 1. 2007. doi:10.1099/ijs.0.64923-0. PMID 17220429.
  12. ^ Tomás, A.F.; Karakashev, D.; Angelidaki, I. (2013). "Thermoanaerobacter pentosaceus sp. nov., an anaerobic, extremely thermophilic, high ethanol-yielding bacterium isolated from household waste". International Journal of Systematic and Evolutionary Microbiology. 63 (7): 2396–2404. doi:10.1099/ijs.0.045211-0. PMID 23178727.
  13. ^ Onyenwoke, R. U.; Kevbrin, V. V.; Lysenko, A. M.; Wiegel, J. (2007). "Thermoanaerobacter pseudethanolicus sp. nov., a thermophilic heterotrophic anaerobe from Yellowstone National Park". International Journal of Systematic and Evolutionary Microbiology. 57 (10): 2191–2193. doi:10.1099/ijs.0.65051-0. PMID 17911280.
  14. ^ Slobodkin, A.I.; Tourova, T.P.; Kuznetsov, B.B.; Kostrikina, N.A.; Chernyh, N.A.; Bonch-Osmolovskaya, E.A. (1999). "Thermoanaerobacter siderophilus sp. nov., a novel dissimilatory Fe(III)-reducing, anaerobic, thermophilic bacterium". International Journal of Systematic Bacteriology. 49 (4): 1471–1478. doi:10.1099/00207713-49-4-1471. PMID 10555328.
  15. ^ Lee, Y. -J.; Dashti, M.; Prange, A.; Rainey, F. A.; Rohde, M.; Whitman, W. B.; Wiegel, J. (2007). "Thermoanaerobacter sulfurigignens sp. nov., an anaerobic thermophilic bacterium that reduces 1 M thiosulfate to elemental sulfur and tolerates 90 mM sulfite". International Journal of Systematic and Evolutionary Microbiology. 57 (7): 1429–1434. doi:10.1099/ijs.0.64748-0. PMID 17625170.
  16. ^ Bonch-Osmolovskaya, E.A.; Miroshnichenko, M.L.; Chernykh, N.A.; Kostrikina, N.A.; Pikuta, E.V.; Rainey, F.A. (1997). "Reduction of elemental sulfur by moderately thermophilic organotrophic bacteria and the description of Thermoanaerobacter sulfurophilus sp. nov". Microbiology. 66: 483–489.
  17. ^ Wagner, I. D.; Zhao, W.; Zhang, C. L.; Romanek, C. S.; Rohde, M.; Wiegel, J. (2008). "Thermoanaerobacter uzonensis sp. nov., an anaerobic thermophilic bacterium isolated from a hot spring within the Uzon Caldera, Kamchatka, Far East Russia". International Journal of Systematic and Evolutionary Microbiology. 58 (11): 2565–2573. doi:10.1099/ijs.0.65343-0. PMID 18984694.
  18. ^ Cook, G.M.; Rainey, F.A.; Patel, B.K.C.; Morgan, H.W. (1996). "Characterization of a new obligately anaerobic thermophile, Thermoanaerobacter wiegelii sp. nov". International Journal of Systematic and Evolutionary Microbiology. 46 (1): 123–127. doi:10.1099/00207713-46-1-123. PMID 8573487.
  19. ^ Fardeau, M.; Salinas, M.; L'Haridon, S.; Jeanthon, C.; Verhé, F.; Cayol, J.; Patel, B.; Garcia, J.; Ollivier, B. (2004). "Isolation from oil reservoirs of novel thermophilic anaerobes phylogenetically related to Thermoanaerobacter subterraneus: reassignment of T. subterraneus, Thermoanaerobacter yonseiensis, Thermoanaerobacter tengcongensis and Carboxydibrachium pacificum to Caldanaerobacter subterraneus gen. nov., sp. nov., comb. nov. as four novel subspecies". International Journal of Systematic and Evolutionary Microbiology. 54 (2): 467–474. doi:10.1099/ijs.0.02711-0. PMID 15023962.
  20. ^ J.P. Euzéby. "Thermoanaerobacter". List of Prokaryotic names with Standing in Nomenclature (LPSN). Retrieved 2022-09-09.
  21. ^ Sayers; et al. "Thermoanaerobacter". National Center for Biotechnology Information (NCBI) taxonomy database. Retrieved 2022-09-09.
  22. ^ "The LTP". Retrieved 20 November 2023.
  23. ^ "LTP_all tree in newick format". Retrieved 20 November 2023.
  24. ^ "LTP_08_2023 Release Notes" (PDF). Retrieved 20 November 2023.
  25. ^ "GTDB release 08-RS214". Genome Taxonomy Database. Retrieved 10 May 2023.
  26. ^ "bac120_r214.sp_label". Genome Taxonomy Database. Retrieved 10 May 2023.
  27. ^ "Taxon History". Genome Taxonomy Database. Retrieved 10 May 2023.