User:Manudouz/sandbox/Evolution

Main Biology and organisms DNA, RNA, & proteins Evolution & phylogeny Lakes & mountains Misc

To-Do List ...

Phylogeny

1. Cladogram.
2. Echimyidae + Capromyidae phylogeny.
   1. Euryzygomatomyinae.
3. Ctenohystrica phylogeny at the family level.
   1. Template of Ctenohystrica cladogram at the family level.
   2. Octodontoidea.
4. Anomaluridae phylogeny.
5. Xenarthra phylogeny at the family level.
6. Tunicata
   1. Template of Tunicata subphylum cladogram.
   2. Template of Tunicata cladogram at the family level.
7. Template of Pteropoda cladogram.

Models

1. CAT model.
2. Lobry (1995) model.
3. Models of codon evolution.
4. Models of amino acid substitutions.

Methods

1. Single-linkage clustering.
2. Complete-linkage clustering.
3. NJ.

Cladistics

1. Character.
2. Character polarization.
3. Homoplasy.
4. Reversion.

Trees

1. Patristic distance.
2. Distance between trees.
3. Basal.