User:Pouria gholami tilko/ChIA-PET

Before edit:

Alternatives

Chromatin immunoprecipitation:

ChIP-Seq, ChIP-PET, ChIP-SAGE, ChIP-CHIP.

Chromosome conformation capture:

2-C, 3-C, 4-C, 5-C.

Paired-end tags:

PET.

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edited below

Alternatives

Chromosome conformation techniques

Chromatin immunoprecipitation (ChIP):

The original ChIP method is an antibody-based technology that identify and bind proteins selectively in order to offer information regarding chromatin states and gene transcription.[1]

Genome Architecture Mapping (GAM):

This technique eliminates a number of drawbacks associated with 3C-based techniques by collecting three-dimensional proximities between any number of genomic loci.

Split-Pool Recognition of Interactions by Tag Extension (SPRITE):

SPRITE is a technique for mapping higher-order interactions in the nucleus across the genome. This approach detects interactions that occur over greater spatial distances ​and it allows for genome-wide detection of numerous RNA and DNA interactions that occur at the same time.

ChIA-Drop:

ChIA-Drop is a straightforward method for analyzing multiplex chromatin interactions using droplet-based and barcode-linked sequencing at single-molecule accuracy. Previous pairwise population-level approaches such as Hi-C and ChIA-PET are distinct from this technology.