Wikipedia:Wiki Ed/University of Chicago/The Chemistry of Enzyme catalysis (Spring 2017)

From Wikipedia, the free encyclopedia
This Course Wikipedia Resources Connect
Questions? Ask us:

contact@wikiedu.org

Course name
The Chemistry of Enzyme catalysis
Institution
University of Chicago
Instructor
Jared Lewis
Wikipedia Expert
Ian (Wiki Ed)
Subject
Chemistry
Course dates
2017-01-04 00:00:00 UTC – 2017-03-17 23:59:59 UTC
Approximate number of student editors
30


Student Assigned Reviewing
Vlisnyak D-lysine 5,6-aminomutase Nitrogenase
Kitaylor Tryptophan 7-halogenase Chorismate mutase
Jmont31 Tryptophan 7-halogenase Chorismate mutase
Mlee17 Nitrogenase D-lysine 5,6-aminomutase
Kkentala Steroid Delta-isomerase Dihydrofolate reductase
Gbzwg Lysozyme Steroid Delta-isomerase
TessaColameta Chorismate mutase Lysozyme
Cpwatkins Steroid Delta-isomerase Dihydrofolate reductase
Mgoetz2 Nitrogenase D-lysine 5,6-aminomutase
Jgmurphy102 4-hydroxybenzoate 3-monooxygenase Adenylate kinase
Mlk803 Nitrogenase D-lysine 5,6-aminomutase
Snodgrah Adenylate kinase 4-hydroxybenzoate 3-monooxygenase
GomezChristian Chorismate mutase Lysozyme
Adbates 4-hydroxybenzoate 3-monooxygenase Adenylate kinase
Arago2 4-hydroxybenzoate 3-monooxygenase Adenylate kinase
Kjesse16 Nitrogenase D-lysine 5,6-aminomutase
Lcaudrey D-lysine 5,6-aminomutase Nitrogenase
AtreyiB Tryptophan 7 halogenase Chorismate mutase
Bekidl Dihydrofolate reductase Tryptophan 7 halogenase
Yinfj16 Dihydrofolate reductase Tryptophan 7 halogenase
Jsolomon580 Lysozyme Steroid Delta-isomerase
Mjburke17 Lysozyme Steroid Delta-isomerase
Charles Cole Chorismate mutase Lysozyme
Jadewey Steroid Delta-isomerase Dihydrofolate reductase
Rhli D-lysine 5,6-aminomutase Nitrogenase
Arvin Sookezian Adenylate kinase 4-hydroxybenzoate 3-monooxygenase
Hertzogje Adenylate kinase 4-hydroxybenzoate 3-monooxygenase
Nhattrongdo Dihydrofolate reductase Tryptophan 7 halogenase

Timeline

Week 1

Course meetings
Wednesday, 4 January 2017   |   Friday, 6 January 2017

Week 2

Course meetings
Monday, 9 January 2017   |   Wednesday, 11 January 2017   |   Friday, 13 January 2017

Week 3

Course meetings
Monday, 16 January 2017   |   Wednesday, 18 January 2017   |   Friday, 20 January 2017

Week 4

Course meetings
Monday, 23 January 2017   |   Wednesday, 25 January 2017   |   Friday, 27 January 2017

Week 5

Course meetings
Monday, 30 January 2017   |   Wednesday, 1 February 2017   |   Friday, 3 February 2017

Week 6

Course meetings
Monday, 6 February 2017   |   Wednesday, 8 February 2017   |   Friday, 10 February 2017

Week 7

Course meetings
Monday, 13 February 2017   |   Wednesday, 15 February 2017   |   Friday, 17 February 2017
In class - Feb 15
Introduction to the Wikipedia project

 Welcome to your Wikipedia project's course timeline. This page will guide you through the Wikipedia project for your course. Be sure to check with your instructor to see if there are other pages you should be following as well. 

 Your course has also been assigned a Wikipedia Content Expert. Check your Talk page for notes from them. You can also reach them through the "Get Help" button on this page. 

The overall goal of the project will be to:

  • Create or improve the "Mechanism" section of a Wikipedia page for an enzyme of your choice by including data from multiple journal articles, original figures, and references.
  • Review another group's page to provide constructive criticism of their work so that they can improve their page.
  • Present your completed page and a discussion of your project in class.

 To get started, please review the following handouts: 

Assignment - Practicing the basics

Individual assignment, due Friday Feb 17th.  


  • If you haven't already, create an account and join this course page, using the enrollment link your instructor sent you.
  •  It's time to dive into Wikipedia. Below, you'll find the first set of online trainings you'll need to take. New modules will appear on this timeline as you get to new milestones. Be sure to check back and complete them! Incomplete trainings will be reflected in your grade. 
  •  When you finish the trainings, practice by introducing yourself to a classmate on that classmate’s Talk page. 

Week 8

Course meetings
Monday, 20 February 2017   |   Wednesday, 22 February 2017   |   Friday, 24 February 2017
Assignment - Finalize & evaluate your topic

Group assignment, due Wednesday Feb 22nd.

It's time to think critically about Wikipedia articles. You'll one of the available Wikipedia articles, and leave suggestions for improving it on the its article Talk page. You can also look for articles not include in the "available articles" section if you like. 

  • Individually complete the "Evaluating Articles and Sources" training (linked below).
  • Review page 6 of your Editing Wikipedia guidebook.
  • As a group (use the same groups that we have used for in class presentations), select an enzyme from the list of "Available articles" on the Articles tab above and assign it to yourself. Members of your group should make sure sure they are assigned the topic. To do so, the other members of your group can head to the Students tab and assign themselves the article title. If you don't see an enzyme that you want to work on in the list, let Mary or Prof. Lewis know which topic you would prefer working on before you finalize your topic. 
  • Pick one member of your group whose sandbox space you will draft your work in. Make sure the other group members leave notes in their sandboxes with a link to the group draft space. 
  • Read the Wikipedia article about Enzyme catalysis & review your specific enzyme article. 
  • While you read both articles, consider the following questions (but don't feel limited to these): 
    • Is each fact referenced with an appropriate, reliable reference?
    • Is everything in the article relevant to the article topic? Is there anything that distracted you?
    • Is the article neutral? Are there any claims, or frames, that appear heavily biased toward a particular position?
    • Where does the information come from? Are these neutral sources? If biased, is that bias noted?
    • Are there viewpoints that are overrepresented, or underrepresented?
    • Check a few citations. Do the links work? Is there any close paraphrasing or plagiarism in the article?
    • Is any information out of date? Is anything missing that could be added?
    • Is there recent research that's missing? What key names in the field don't appear in the references? 
    • How does the enzyme catalysis article compare to the way we've discussed this topic in class? 
    • How does specific enzyme article discuss catalysis? Is there a subsection about the mechanism of catalysis? 
    • What would you change about your specific enzyme article if you could? 
    • Don't forget to take notes in your sandbox space. These notes will be used to help guide you for later assignments in the term. 
  •  Choose at least 2 questions relevant to the article you're evaluating. Leave your evaluation on the article's Talk page. Be sure to sign your feedback with four tildes — Nhattrongdo (talk) 18:17, 27 February 2017 (UTC). [reply]
Assignment - Draft your article contribution

Group assignment, due Monday Feb 27th.

You are being asked to add new or missing information to the enzyme article you've selected. You can do this in a few ways:

  • Add new citations or references to the article. Are there any scholars in the field whose work is missing from this article? 
  • Add 3-5 new paragraphs of content backed up with citations to your article. Is there a section on "Mechanism"  and if so, is it very good? What could you add about this topic? Be sure to include conclusions from different experimental and theoretical approaches similar to the different case studies that we have considered in class. 
  • If there are no figures showing key aspects of the mechanism, use Pymol to construct one. Be sure to use a white background in your renderings.
  • Rewrite one of the paragraphs that is particularly poorly written. Make sure not to delete any links or references. 
  • You can copy and paste content from the live article into your sandbox space for help re-writing or framing. Just makes sure you don't delete anything! 

Draft your work in the sandbox space. Don't forget you can reach out to your instructor or your Content Expert if you have any questions or want someone to review your draft.

Resources: Editing Wikipedia pages 7–9

Week 9

Course meetings
Monday, 27 February 2017   |   Wednesday, 1 March 2017   |   Friday, 3 March 2017
Assignment - Peer review another groups draft

Individual assignment, due Friday March 3rd. 


  • First, take the "Peer Review" online training.
  • Select one other groups draft that you will peer review and copyedit. On the Articles tab, find the article topic that you want to review, and then assign it to yourself in the Review column. 
  • Peer review your classmates' drafts. Leave suggestions on on the Talk page of the article, or sandbox, that your fellow student group is working on. Other editors may be reviewing your work, so look for their comments! Be sure to acknowledge feedback from other Wikipedians. 
  • As you review, make spelling, grammar, and other adjustments. Pay attention to the tone of the article. Is it encyclopedic? 
Assignment - Respond to peer review

Group assignment, due Wednesday March 8th. 

Your group should have some feedback from other students and possibly your instructor and other Wikipedians. It's time to work with that feedback to improve your article!

  • Read Editing Wikipedia pages 12 and 14.
  • Return to your draft or article and think about the suggestions. Decide which ones to start implementing. 
  • Reach out to your instructor or your Content Expert if you have any questions. 

Week 10

Course meetings
Monday, 6 March 2017   |   Wednesday, 8 March 2017   |   Friday, 10 March 2017
Assignment - Move your draft live!

Group assignment, due March 13th.

Once you've made improvements to your article based on any feedback, it's time to move your work to Wikipedia proper - the "mainspace." 

Editing an existing article?

  • NEVER copy and paste your draft of an article over the entire article. Instead, edit small sections at a time.
  • Re-read your article as it is "live" and make sure the changes you made still make sense. Don't just copy and paste into any one section without thinking about the article in its entirety. 
  • Copy your edits into the article. Make many small edits, saving each time, and leaving an edit summary. Never replace more than one to two sentences without saving!
  • Make sure when you copy you are in the "Edit" or "Edit source" view on both your draft and the main article space. 

After you've moved your draft live:

  • Read Editing Wikipedia page 12 to see how to create links from your article to others, and from other articles to your own. Try to link to 3–5 articles, and link to your article from 2–3 other articles. 
  • Read Editing Wikipedia page 15 to review a final check-list before completing your assignment.
  • Copyedit the article for spelling or grammatical mistakes.
  • Don't forget that you can ask for help from your Content Expert at any time!

Week 11

Course meetings
Monday, 13 March 2017   |   Wednesday, 15 March 2017   |   Friday, 17 March 2017
In class - March 15
Final Presentations

This week in class you and your group will present about your Wikipedia editing experience. The presentations should be roughly 10 min and will be given during our scheduled final exam time from 10:30a-12:30p in our usual classroom (HGS 101).

  • Your presentation will consist of both a tour of your live site and a discussion
  • Your discussion should include the following:
    • Information about your article topic (i.e. the science that you included);
    • Notes about how the article was when you found it;
    • Comments on what you aimed to improve about the article topic;
    • Thoughts on the peer review process, including what you learned during your review and while updating your article based on reviews;
    • Discussion about what changes you implemented and why you felt they were valuable;
    • Thoughts about the Wikipedia editing experience overall, including what you learned, what was hard about it, and what you found to be most rewarding.